3MIB

Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound nitrite

Structural Biology Knowledgebase: 3MIB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MIB

Classification: OXIDOREDUCTASE

Total Structure Weight: 35608.49

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-glycine alpha-amidating monooxygenase A 314 Rattus norvegicus EC#: 1.14.17.3 IUBMB
Fragment: UNP residues 43-356, monooxygenase domain
Gene Name(s): Pam

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NO2
Query on NO2

A NITRITE ION
N O2
IOVCWXUNBOPUCH-UHFFFAOYSA-M
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.200
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.61 α = 90.00
b = 68.62 β = 90.00
c = 80.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-04-10
  • Released Date: 2010-11-24
  • Deposition author(s): Chufan, E.E., Eipper, B.A., Mains, R.E., Amzel, L.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4