3M3J

A new crystal form of Lys48-linked diubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 3M3J

Classification: SIGNALING PROTEIN

Total Structure Weight: 51811.24

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin A, B, C..., D, E, FA, B, C, D, E, F 76 Bos taurus Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B, C, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.183
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 58.70 α = 90.00
b = 78.67 β = 97.94
c = 93.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-09
  • Released Date: 2010-03-23
  • Deposition author(s): Trempe, J.F., Brown, N.R., Noble, M.E.M., Endicott, J.A.

Revision History

  • Version 1_0: 2010-03-23

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance