3LNY

Second PDZ domain from human PTP1E in complex with RA-GEF2 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 3LNY

Classification: signaling protein / signaling protein

Total Structure Weight: 10902.13

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein phosphatase non-receptor type 13 A 96 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: PDZ2 domain
Gene Name(s): PTPN13 Gene View PNP1 PTP1E PTPL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Rap guanine nucleotide exchange factor 6 B 6 Homo sapiens Fragment: C-terminal residues 1596-1601
Gene Name(s): RAPGEF6 Gene View PDZGEF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.163
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 73.96 α = 90.00
b = 73.96 β = 90.00
c = 134.06 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-02-03
  • Released Date: 2010-03-23
  • Deposition author(s): Zhang, J., Chang, A., Ke, H., Phillips Jr., G.N., Lee, A.L., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2016-09-28
    Type: Database references