3L24

Crystal Structure of the Nerve Agent Degrading Organophosphate Anhydrolase/Prolidase in Complex with Inhibitors

Structural Biology Knowledgebase: 3L24 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.235

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3L24

Classification: HYDROLASE

Total Structure Weight: 178280.39

Macromolecule Entities
Molecule Chains Length Organism Details
Xaa-Pro dipeptidase A, B, C 517 Alteromonas sp. EC#: 3.4.13.9 IUBMB
Mutation: A211P, C283M, A439L
Gene Name(s): pepQ opaA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOA
Query on GOA

A, B, C GLYCOLIC ACID
HYDROXYACETIC ACID; HYDROXYETHANOIC ACID (Synonym)
C2 H4 O3
AEMRFAOFKBGASW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.235
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 124.35 α = 90.00
b = 143.93 β = 90.00
c = 219.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-14
  • Released Date: 2010-01-26
  • Deposition author(s): Vyas, N.K., Nichitenko, A., Rastogi, V.K., Shah, S.S., Quiocho, F.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4