3KZW
Crystal structure of cytosol aminopeptidase from Staphylococcus aureus COL
- PDB DOI: https://doi.org/10.2210/pdb3KZW/pdb
- Classification: HYDROLASE
- Organism(s): Staphylococcus aureus subsp. aureus COL
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2009-12-08 Released: 2010-01-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.240 
- R-Value Work: 0.221 
- R-Value Observed: 0.222 
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytosol aminopeptidase | 515 | Staphylococcus aureus subsp. aureus COL | Mutation(s): 0  Gene Names: SACOL0945 EC: 3.4.11.1 | ||
UniProt | |||||
Find proteins for A0A0H2WYH0 (Staphylococcus aureus (strain COL)) Explore A0A0H2WYH0  Go to UniProtKB:  A0A0H2WYH0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0H2WYH0 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | IC [auth J], MB [auth G], QA [auth D], T [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
CL Query on CL | AB [auth F] AC [auth I] BA [auth C] BB [auth F] CA [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | AA [auth B] BC [auth I] EB [auth F] HA [auth C] HC [auth J] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.240 
- R-Value Work: 0.221 
- R-Value Observed: 0.222 
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/m33kzw
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 143.383 | α = 90 |
b = 154.733 | β = 90 |
c = 340.101 | γ = 90 |
Software Name | Purpose |
---|---|
Blu-Ice | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2010-01-12  Deposition Author(s): Hattne, J., Dubrovska, I., Halavaty, A., Minasov, G., Scott, P., Shuvalova, L., Winsor, J., Otwinowski, Z., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2010-01-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description