3KTK

Structure of ClpP in complex with ADEP2 in triclinic crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.269

Literature

Macromolecules
Sequence Display for 3KTK

Classification: HYDROLASE / ANTIBIOTIC

Total Structure Weight: 319300.16

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent Clp protease proteolytic subunit A, B, C..., D, E, F, G, H, I, J, K, L, M, NA, B, C, D, E, F, G, H, I, J, K, L, M, N 199 Bacillus subtilis EC#: 3.4.21.92 IUBMB
Gene Name(s): clpP yvdN BSU34540
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Acyldepsipeptide 2 0, 1, O..., P, Q, R, S, T, U, V, W, X, Y, Z0, 1, O, P, Q, R, S, T, U, V, W, X, Y, Z 7 Synthetic construct Mutation: X1X, F2X, X5X

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000504
Query on PRD_000504
0, 1, O, P, Q, R, S, T, U, V, W, X, Y, Z ADEP2 Cyclic depsipeptide /
Antibiotic
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.269
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 97.17 α = 71.51
b = 97.24 β = 73.89
c = 100.04 γ = 77.30

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-25
  • Released Date: 2010-03-23
  • Deposition author(s): Lee, B.-G., Brotz-Oesterhelt, H., Song, H.K.

Revision History

  • Version 1_0: 2010-03-23

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2012-12-12

    Type: Other