3KTI

Structure of ClpP in complex with ADEP1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 3KTI

Classification: HYDROLASE / ANTIBIOTIC

Total Structure Weight: 161087.50

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent Clp protease proteolytic subunit A, B, C..., D, E, F, GA, B, C, D, E, F, G 199 Bacillus subtilis EC#: 3.4.21.92 IUBMB
Gene Name(s): clpP yvdN BSU34540
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Acyldepsipeptide 1 H, I, J..., K, L, M, NH, I, J, K, L, M, N 7 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NHE
Query on NHE

A, B, C, D, E, F, G 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
N-CYCLOHEXYLTAURINE; CHES (Synonym)
C8 H17 N O3 S
MKWKNSIESPFAQN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A, B, C, D, E, F, G DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000503
Query on PRD_000503
H, I, J, K, L, M, N ADEP1 Cyclic depsipeptide /
Antibiotic
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.217
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 121.64 α = 90.00
b = 151.76 β = 120.03
c = 100.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-25
  • Released Date: 2010-03-23
  • Deposition author(s): Lee, B.-G., Brotz-Oesterhelt, H., Song, H.K.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2013-02-27
    Type: Other