3KM4

Optimization of Orally Bioavailable Alkyl Amine Renin Inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 3KM4

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 76627.35

Macromolecule Entities
Molecule Chains Length Organism Details
Renin A, B 337 Homo sapiens EC#: 3.4.23.15 IUBMB
Gene Name(s): REN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
22X
Query on 22X

A, B (3R)-3-[(1S)-4-(acetylamino)-1-(3-chlorophenyl)- 1-hydroxybutyl]-N-{(1S)-2-cyclohexyl-1-[(methylamino)methyl]ethyl}piperidine- 1-carboxamide
C28 H45 Cl N4 O3
PPGUIDOUTGLYCO-MAARLIENSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
22X IC50: 1.3 - 16 nM (100) BindingDB

IC50: 1.3 nM  BindingMOAD
IC50: 1.3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.83 α = 90.00
b = 96.94 β = 90.00
c = 148.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-09
  • Released Date: 2010-01-12
  • Deposition author(s): Wu, Z., McKeever, B.M.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2013-06-19
    Type: Database references