3K9Y

Crystal structure of rat mitochondrial P450 24A1 S57D in complex with CYMAL-5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.251

Literature

Macromolecules
Sequence Display for 3K9Y

Classification: OXIDOREDUCTASE

Total Structure Weight: 114089.66

Macromolecule Entities
Molecule Chains Length Organism Details
1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial A, B 482 Rattus norvegicus EC#: 1.14.15.16 IUBMB
Fragment: residues 34-514
Mutation: S57D
Gene Name(s): Cyp24a1 Cyp24
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CM5
Query on CM5

A 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL- BETA-D-GLUCOPYRANOSIDE; CYMAL-5 (Synonym)
C23 H42 O11
RVTGFZGNOSKUDA-ZNGNCRBCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.251
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 182.30 α = 90.00
b = 81.30 β = 122.44
c = 108.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-16
  • Released Date: 2009-12-15
  • Deposition author(s): Annalora, A.J., Goodin, D.B., Hong, W., Zhang, Q., Johnson, E.F., Stout, C.D.

Revision History

  • Version 1_0: 2009-12-15

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance