3J9W

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 3J9W

Classification: RIBOSOME

Total Structure Weight: 2185399.00


Macromolecule Entities
Molecule Chains Length Organism Details
30S ribosomal protein uS2 AB 246 Bacillus subtilis Gene Name(s): rpsB BSU16490
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS3 AC 218 Bacillus subtilis Gene Name(s): rpsC BSU01220
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS4 AD 200 Bacillus subtilis Gene Name(s): rpsD BSU29660
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS5 AE 166 Bacillus subtilis Gene Name(s): rpsE spcA BSU01330
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein bS6 AF 95 Bacillus subtilis Gene Name(s): rpsF BSU40910
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS7 AG 156 Bacillus subtilis Gene Name(s): rpsG BSU01110
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS8 AH 132 Bacillus subtilis Gene Name(s): rpsH BSU01300
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS9 AI 130 Bacillus subtilis Gene Name(s): rpsI BSU01500
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS10 AJ 102 Bacillus subtilis Gene Name(s): rpsJ tetA BSU01150
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS11 AK 131 Bacillus subtilis Gene Name(s): rpsK BSU01420
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS12 AL 138 Bacillus subtilis Gene Name(s): rpsL fun strA BSU01100
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS13 AM 121 Bacillus subtilis Gene Name(s): rpsM BSU01410
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS14 AN 61 Bacillus subtilis Gene Name(s): rpsN1 rpsN rpsNA rpsZ BSU01290
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS15 AO 89 Bacillus subtilis Gene Name(s): rpsO BSU16680
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein bS16 AP 90 Bacillus subtilis Gene Name(s): rpsP BSU15990
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS17 AQ 87 Bacillus subtilis Gene Name(s): rpsQ BSU01250
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein bS18 AR 79 Bacillus subtilis Gene Name(s): rpsR BSU40890
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein uS19 AS 92 Bacillus subtilis Gene Name(s): rpsS BSU01200
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein bS20 AT 88 Bacillus subtilis Gene Name(s): rpsT yqeO BSU25550
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MifM AZ 95 Bacillus subtilis Gene Name(s): mifM yqzJ BSU23880
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL28 B0 62 Bacillus subtilis Gene Name(s): rpmB yloT BSU15820
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL29 B1 66 Bacillus subtilis Gene Name(s): rpmC BSU01240
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL30 B2 59 Bacillus subtilis Gene Name(s): rpmD BSU01340
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL31 B3 66 Bacillus subtilis Gene Name(s): rpmE BSU37070
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL32 B4 59 Bacillus subtilis Gene Name(s): rpmF BSU15080
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL33 B5 49 Bacillus subtilis Gene Name(s): rpmGA rpmG1 BSU24900
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL34 B6 44 Bacillus subtilis Gene Name(s): rpmH BSU41060
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL35 B7 66 Bacillus subtilis Gene Name(s): rpmI BSU28860
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL36 B8 37 Bacillus subtilis Gene Name(s): rpmJ BSU01400
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL2 BD 277 Bacillus subtilis Gene Name(s): rplB BSU01190
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL3 BE 209 Bacillus subtilis Gene Name(s): rplC BSU01160
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL4 BF 207 Bacillus subtilis Gene Name(s): rplD BSU01170
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL5 BG 179 Bacillus subtilis Gene Name(s): rplE BSU01280
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL6 BH 179 Bacillus subtilis Gene Name(s): rplF BSU01310
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL10 BJ 166 Bacillus subtilis Gene Name(s): rplJ BSU01040
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL11 BK 141 Bacillus subtilis Gene Name(s): rplK relC tsp6 BSU01020
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL13 BM 145 Bacillus subtilis Gene Name(s): rplM BSU01490
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL14 BN 122 Bacillus subtilis Gene Name(s): rplN BSU01260
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL15 BO 146 Bacillus subtilis Gene Name(s): rplO BSU01350
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL16 BP 144 Bacillus subtilis Gene Name(s): rplP BSU01230
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL17 BQ 120 Bacillus subtilis Gene Name(s): rplQ BSU01440
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL18 BR 120 Bacillus subtilis Gene Name(s): rplR BSU01320
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL19 BS 115 Bacillus subtilis Gene Name(s): rplS BSU16040
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL20 BT 119 Bacillus subtilis Gene Name(s): rplT BSU28850
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL21 BU 102 Bacillus subtilis Gene Name(s): rplU BSU27960
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL22 BV 113 Bacillus subtilis Gene Name(s): rplV BSU01210
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL23 BW 95 Bacillus subtilis Gene Name(s): rplW BSU01180
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein uL24 BX 103 Bacillus subtilis Gene Name(s): rplX BSU01270
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein bL27 BZ 94 Bacillus subtilis Gene Name(s): rpmA BSU27940
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
16S ribosomal RNA AA 1555 Bacillus subtilis
tRNA-Asp AX 77 Bacillus subtilis
mRNA AY 19 Bacillus subtilis
23S ribosomal RNA BA 2928 Bacillus subtilis
5S ribosomal RNA BB 119 Bacillus subtilis


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-03-16
  • Released Date: 2015-04-29
  • Deposition author(s): Sohmen, D., Chiba, S., Shimokawa-Chiba, N., Innis, C.A., Berninghausen, O., Beckmann, R., Ito, K., Wilson, D.N.

Revision History

  • Version 1_0: 2015-04-29

    Type: Initial release

  • Version 1_1: 2015-05-06

    Type: Database references