Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
3J1N
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 471728.23
    Molecule: DNA-directed RNA polymerase II subunit RPB1
    Polymer: 1 Type: protein Length: 1455
    Chains: A
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPO21 RPB1 RPB220 SUA8 YDL140C D2150
    UniProtKB: Protein Feature View | Search PDB | P04050  
    Molecule: DNA-directed RNA polymerase II subunit RPB2
    Polymer: 2 Type: protein Length: 1224
    Chains: B
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB2 RPB150 RPO22 YOR151C
    UniProtKB: Protein Feature View | Search PDB | P08518  
    Molecule: DNA-directed RNA polymerase II subunit RPB3
    Polymer: 3 Type: protein Length: 268
    Chains: C
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB3 YIL021W
    UniProtKB: Protein Feature View | Search PDB | P16370  
    Molecule: DNA-directed RNA polymerase II subunit RPB4
    Polymer: 4 Type: protein Length: 218
    Chains: D
    Organism: Saccharomyces cerevisiae
    Molecule: DNA-directed RNA polymerase II subunit RPABC1
    Polymer: 5 Type: protein Length: 215
    Chains: E
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB5 RPA7 RPC9 YBR154C YBR1204
    UniProtKB: Protein Feature View | Search PDB | P20434  
    Molecule: DNA-directed RNA polymerase II subunit RPABC2
    Polymer: 6 Type: protein Length: 84
    Chains: F
    Organism: Saccharomyces cerevisiae
    Molecule: DNA-directed RNA polymerase II subunit RPB7
    Polymer: 7 Type: protein Length: 171
    Chains: G
    Organism: Saccharomyces cerevisiae
    Molecule: DNA-directed RNA polymerase II subunit RPABC3
    Polymer: 8 Type: protein Length: 146
    Chains: H
    Organism: Saccharomyces cerevisiae
    Molecule: DNA-directed RNA polymerase II subunit RPB9
    Polymer: 9 Type: protein Length: 122
    Chains: I
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB9 YGL070C
    UniProtKB: Protein Feature View | Search PDB | P27999  
    Molecule: DNA-directed RNA polymerase II subunit RPABC5
    Polymer: 10 Type: protein Length: 70
    Chains: J
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB10 YOR210W
    UniProtKB: Protein Feature View | Search PDB | P22139  
    Molecule: DNA-directed RNA polymerase II subunit RPB11
    Polymer: 11 Type: protein Length: 120
    Chains: K
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB11 YOL005C
    UniProtKB: Protein Feature View | Search PDB | P38902  
    Molecule: DNA-directed RNA polymerase II subunit RPABC4
    Polymer: 12 Type: protein Length: 70
    Chains: L
    Organism: Saccharomyces cerevisiae
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
     
  •   Related PDB Entries Hide
    Identifier Details
    3J1O    
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Asturias, F.J.,  Imasaki, T.

    Deposition:   2012-03-29
    Release:   2013-03-06
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   ELECTRON MICROSCOPY
    Exp. Data:


    EM Resolution [Å]: 16.0
    Aggregation State: PARTICLE
    Symmetry Type: ASYMMETRIC Reconstruction Method: SINGLE PARTICLE
    Specimen Type: VITREOUS ICE (CRYO EM)