3HZI

Structure of mdt protein

Structural Biology Knowledgebase: 3HZI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.265

Literature

Macromolecules
Sequence Display for 3HZI

Classification: Transcription / DNA

Total Structure Weight: 67363.39


Macromolecule Entities
Molecule Chains Length Organism Details
Protein hipA A 440 Escherichia coli EC#: 2.7.11.1 IUBMB
Mutation: D309Q
Gene Name(s): hipA b1507 JW1500
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HTH-type transcriptional regulator hipB B 88 Escherichia coli Gene Name(s): hipB b1508 JW1501
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3' T 21 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ATP N/A in BindingDB
N/A in BindingMoad
Kd: 15000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.265
  • Space Group: P 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 167.25 α = 90.00
b = 167.25 β = 90.00
c = 62.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-23
  • Released Date: 2009-07-28
  • Deposition author(s): Schumacher, M.A.
  • Previous versions: 3DNW

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4