3HN4

Crystal structure of the NK2 fragment (28-289) of human hepatocyte growth factor/scatter factor

Structural Biology Knowledgebase: 3HN4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.263

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3HN4

Classification: HORMONE

Total Structure Weight: 31358.67

Macromolecule Entities
Molecule Chains Length Organism Details
Hepatocyte growth factor A 264 Homo sapiens Fragment: UNP residues 28-289
Mutation: K132E, R134E, C214A
Gene Name(s): HGF Gene View HPTA

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.263
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.15 α = 90.00
b = 48.15 β = 90.00
c = 461.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-29
  • Released Date: 2010-06-09
  • Deposition author(s): Tolbert, W.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4