3HN4

Crystal structure of the NK2 fragment (28-289) of human hepatocyte growth factor/scatter factor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.263

Literature

Macromolecules
Sequence Display for 3HN4

Classification: HORMONE

Total Structure Weight: 31358.51

Macromolecule Entities
Molecule Chains Length Organism Details
Hepatocyte growth factor A 264 Homo sapiens Fragment: UNP residues 28-289
Mutation: K132E, R134E, C214A
Gene Name(s): HGF Gene View HPTA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.263
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 48.15 α = 90.00
b = 48.15 β = 90.00
c = 461.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-29
  • Released Date: 2010-06-09
  • Deposition author(s): Tolbert, W.D.

Revision History

  • Version 1_0: 2010-06-09

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance