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Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains with the artificial ligand THS017
3H7W
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 28083.87
    Molecule: Endothelial PAS domain-containing protein 1
    Polymer: 1 Type: protein Length: 117
    Chains: A
    Fragment: HIF2alpha C-terminal PAS domain (UNP residues 239 to 350)
    Mutation: R247E
    Organism Homo sapiens
    Gene Names EPAS1 BHLHE73 HIF2A MOP2 PASD2
    UniProtKB:   Protein Feature View | Search PDB | Q99814  
    Molecule: Aryl hydrocarbon receptor nuclear translocator
    Polymer: 2 Type: protein Length: 121
    Chains: B
    Fragment: ARNT C-terminal PAS domain (UNP residues 356 to 470)
    Mutation: E362R
    Organism Homo sapiens
    Gene Names ARNT BHLHE2
    UniProtKB:   Protein Feature View | Search PDB | P27540  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1P97  Solution NMR structure of the HIF2alpha C-terminal PAS domain. 
    1X0O  Solution NMR structure of the ARNT C-terminal PAS domain. 
    2A24  NMR-guided model of the heterodimer of wild-type HIF2alpha and ARNT C-terminal PAS domain. 
    2B02  Crystal structure of the ARNT C-terminal PAS domain. 
    3f1n  Crystal structure of the high affinity heterodimer of HIF2 C-terminal PAS domains with internally bound ethylene glycol. 
    3f1o  Crystal structure of the high affinity heterodimer of HIF2 C-terminal PAS domains in complex with the artificial ligand THS-044. 
    3f1p  Crystal structure of the apo-high affinity HIF2 PAS-B heterodimer. 
    3H82  Heterodimer of HIF2 alpha and ARNT C-terminal PAS domains with the artificial ligand THS020 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    018
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    018 C12 H9 F3 N2 O2 S
    2-nitro-N-(thiophen-3-ylmethyl)-4-(trifluoromethyl)aniline
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    018
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    018
    N/Ain BindingDB
    Kd: 590 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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