Crystal Structure of human alpha-N-acetylgalactosaminidase DOI:10.2210/pdb3h53/pdb

3H53   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 96299.52 Molecule: Alpha-N-acetylgalactosaminidase Polymer: 1 Type: protein Length: 400 Chains: A, B EC#: 3.2.1.49    Mutation: N201Q Organism Homo sapiens Gene Name NAGA UniProtKB:   Protein Feature View | Search PDB | P17050         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Trichoplusia ni   Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Synthetic construct   Taxonomy     Polymer: 6 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3H54  Crystal Structure of human alpha-N-acetylgalactosaminidase, complex with GalNAc  3H55  Crystal Structure of human alpha-N-acetylgalactosaminidase, complex with galactose      Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 13 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Clark, N.E.,  Garman, S.C. Deposition:   2009-04-21 Release:   2009-10-20 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Flag residual B-value     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.01 R-Value: 0.163 (obs.) R-Free: 0.194 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 153.53 α = 90.00  b = 114.26 β = 96.11  c = 68.41 γ = 90.00