3H0G

RNA Polymerase II from Schizosaccharomyces pombe

Structural Biology Knowledgebase: 3H0G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.65 Å
  • R-Value Free: 0.321
  • R-Value Work: 0.297

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3H0G

Classification: TRANSCRIPTION

Total Structure Weight: 996106.83

Macromolecule Entities
Molecule Chains Length Organism Details
DNA-directed RNA polymerase II subunit rpb1 A, M 1752 Schizosaccharomyces pombe EC#: 2.7.7.6 IUBMB
Gene Name(s): rpb1 SPBC28F2.12
DNA-directed RNA polymerase II subunit RPB2 B, N 1210 Schizosaccharomyces pombe EC#: 2.7.7.6 IUBMB
Gene Name(s): rpb2 SPAC23G3.01 SPAC521.06
DNA-directed RNA polymerase II subunit RPB3 C, O 297 Schizosaccharomyces pombe Gene Name(s): rpb3 SPCC1442.10c
DNA-directed RNA polymerase II subunit rpb4 D, P 135 Schizosaccharomyces pombe Gene Name(s): rpb4 SPBC337.14
DNA-directed RNA polymerases I, II, and III subunit RPABC1 E, Q 210 Schizosaccharomyces pombe Gene Name(s): rpb5 SPAC23C4.15
DNA-directed RNA polymerases I, II, and III subunit RPABC2 F, R 142 Schizosaccharomyces pombe Gene Name(s): rpb6 rpo15 SPCC1020.04c
DNA-directed RNA polymerase II subunit rpb7 G, S 172 Schizosaccharomyces pombe Gene Name(s): rpb7 SPACUNK4.06c SPAPYUK71.02
DNA-directed RNA polymerases I, II, and III subunit RPABC3 H, T 125 Schizosaccharomyces pombe Gene Name(s): rpb8 SPBC14C8.12
DNA-directed RNA polymerase II subunit RPB9 I, U 113 Schizosaccharomyces pombe Gene Name(s): rpb9 SPAPYUG7.04c
DNA-directed RNA polymerases I, II, and III subunit RPABC5 J, V 71 Schizosaccharomyces pombe Gene Name(s): rpb10 SPAC1B3.12c
DNA-directed RNA polymerase II subunit RPB11 K, W 123 Schizosaccharomyces pombe Gene Name(s): rpb11 SPAC3A12.07
DNA-directed RNA polymerases I, II, and III subunit RPABC4 L, X 63 Schizosaccharomyces pombe Gene Name(s): rpc10 rpb12 SPBC19C2.03

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, I, J, L, M, N, O, U, V, X ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, M MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.65 Å
  • R-Value Free: 0.321
  • R-Value Work: 0.297
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 163.03 α = 90.00
b = 202.68 β = 90.00
c = 391.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-04-09
  • Released Date: 2009-08-25
  • Deposition author(s): Spahr, H., Calero, G., Bushnell, D.A., Kornberg, R.D.

Revision History

  • 2015-06-10
    Type: Linkage | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4