3GZY

Crystal Structure of the Biphenyl Dioxygenase from Comamonas testosteroni Sp. Strain B-356


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 3GZY

Classification: OXIDOREDUCTASE

Total Structure Weight: 73761.85

Macromolecule Entities
Molecule Chains Length Organism Details
Biphenyl dioxygenase subunit alpha A 457 Comamonas testosteroni EC#: 1.14.12.18 IUBMB
Gene Name(s): bphA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Biphenyl dioxygenase subunit beta B 186 Comamonas testosteroni EC#: 1.14.12.18 IUBMB
Gene Name(s): bphE
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

A FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Observed:
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 136.23 α = 90.00
b = 136.23 β = 90.00
c = 106.24 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-04-08
  • Released Date: 2010-05-05
  • Deposition author(s): Kumar, P., Colbert, C.L., Bolin, J.T.

Revision History

  • Version 1_0: 2010-05-05

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2013-02-06

    Type: Database references