Crystal structure of yhjK (haloacid dehalogenase-like hydrolase protein) from Bacillus subtilis
Nocek, B., Stein, A., Wu, R., Jedrzejczak, R., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NTD biosynthesis operon putative hydrolase ntdB | 289 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0  Gene Names: ntdB, yhjK, BSU10540 | ||
UniProt | |||||
Find proteins for O07565 (Bacillus subtilis (strain 168)) Explore O07565  Go to UniProtKB:  O07565 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O07565 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | E [auth A], F [auth B], G [auth C], H [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 72.077 | α = 90 |
b = 111.732 | β = 90 |
c = 135.173 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | phasing |
SHELXD | phasing |
MLPHARE | phasing |
Coot | model building |
PHENIX | model building |
CCP4 | model building |
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |
CCP4 | phasing |