3GQ7

Crystal Structure of the Bacteriophage Phi29 Gene Product 12 N-terminal Fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 3GQ7

Classification: VIRAL PROTEIN

Total Structure Weight: 64630.28

Macromolecule Entities
Molecule Chains Length Organism Details
Preneck appendage protein A 609 Bacillus virus phi29 Fragment: D1*D2D3, residues 89-691
Mutation: K166R, K627Q
Gene Name(s): 12
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO3
Query on CO3

A CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.158
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 89.88 α = 90.00
b = 89.88 β = 90.00
c = 585.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-24
  • Released Date: 2009-05-26
  • Deposition author(s): Xiang, Y., Rossmann, M.G.

Revision History

  • Version 1_0: 2009-05-26

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2012-03-21

    Type: Database references

  • Version 1_3: 2017-11-01

    Type: Refinement description