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Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4
DOI:10.2210/pdb3gom/pdb   NDB ID: UD0080
3GOM
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 6778.69
    Molecule: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'
    Polymer: 1 Type: dna Length: 10
    Chains: A, B
    Details: Holliday junction structure
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1NVY  Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 
    1P4Y  Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BA
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    BA Ba
    BARIUM ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: UD0080
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Naseer, A.,  Cardin, C.J.

    Deposition:   2009-03-19
    Release:   2009-04-07
    Last Modified (REVDAT):   2011-11-02
     
  •   Revision History    Hide
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    2011-11-02
    Citation
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.264 (obs.)
    R-Free: 0.349
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 65.20 α = 90.00 
    b = 23.80 β = 110.01 
    c = 37.41 γ = 90.00