3GOM

Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4

Structural Biology Knowledgebase: 3GOM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.349
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 3GOM

Classification: DNA

Total Structure Weight: 6778.68

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' A, B 10 synthetic Holliday junction structure

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BA
Query on BA

A, B BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.349
  • R-Value Work: 0.260
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.20 α = 90.00
b = 23.80 β = 110.01
c = 37.41 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2009-03-19
  • Released Date: 2009-04-07
  • Deposition author(s): Naseer, A., Cardin, C.J.

Revision History

  • 2011-11-02
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4