3GMZ

Crystal of human arginase in complex with L-ornithine. Resolution 1.43 A.

Structural Biology Knowledgebase: 3GMZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.147

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3GMZ

Classification: Hydrolase / Hydrolase Inhibitor

Total Structure Weight: 70044.47

Macromolecule Entities
Molecule Chains Length Organism Details
Arginase-1 A, B 322 Homo sapiens EC#: 3.5.3.1 IUBMB
Gene Name(s): ARG1 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ORN
Query on ORN

A, B L-ornithine
C5 H12 N2 O2
AHLPHDHHMVZTML-BYPYZUCNSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.147
  • Space Group: P 3

Unit Cell:

Length (Å) Angle (°)
a = 90.39 α = 90.00
b = 90.39 β = 90.00
c = 69.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-15
  • Released Date: 2010-01-26
  • Deposition author(s): Di Costanzo, L., Christianson, D.W.

Revision History

  • 2013-06-19
    Type: Citation | Details: Citation update
  • 2011-07-20
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4