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Crystal Structure of the E. coli clamp loader bound to Primer-Template DNA and Psi Peptide
 
 
DOI:10.2210/pdb3gli/pdb   NDB ID: PD1260
3GLI
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 440408.18
     
    Molecule:DNA polymerase III subunit delta
    Polymer:1Type:polypeptide(L)Length:343
    Chains:A, F
    EC#:2.7.7.7 Go to IUBMB EC entry  
    Molecule:DNA polymerase III subunit tau
    Polymer:2Type:polypeptide(L)Length:395
    Chains:B, C, D, G, H, I
    EC#:2.7.7.7 Go to IUBMB EC entry  
    Fragment:UNP residues 1-373
    Molecule:DNA polymerase III subunit delta'
    Polymer:3Type:polypeptide(L)Length:334
    Chains:E, J
    EC#:2.7.7.7 Go to IUBMB EC entry  
    Molecule:DNA (5'-D(*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3')
    Polymer:4Type:polydeoxyribonucleotideLength:15
    Chains:K, M
    Molecule:DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3')
    Polymer:5Type:polydeoxyribonucleotideLength:10
    Chains:L, N
    Molecule:DNA polymerase III subunit psi
    Polymer:6Type:polypeptide(L)Length:27
    Chains:O, P
    EC#:2.7.7.7 Go to IUBMB EC entry  
    Fragment:UNP residues 2-28
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 5
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 6
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1JR3   
    1SXJ   
    1XXH   
    1XXI   
    3GLF   
    3GLG   
    3GLH   
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    ADP     ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 3DLigand Explorer Link out to Ligand Expos:ADP Link out to SuperLigands:ADP Link out to SuperHapten:ADP
    BEF     BERYLLIUM TRIFLUORIDE ION Be F3 3DLigand Explorer Link out to Ligand Expos:BEF Link out to SuperLigands:BEF Link out to SuperHapten:BEF
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
    ZN     ZINC ION Zn 3DLigand Explorer Link out to Ligand Expos:ZN Link out to SuperLigands:ZN Link out to SuperHapten:ZN
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    ADP ADENOSINE-5'-DIPHOSPHATE (parent: A)(type: nonPolymer) C10 H15 N5 O10 P2 3D Ligand Explorer Link out to Ligand Expos:ADP Link out to SuperLigands:ADP Link out to SuperHapten:ADP 2D
     
     
  •  
    Move Section Derived Data Hide
     
     
 
< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Simonetta, K.R.,   Cantor, A.J.,   Kuriyan, J.

    Deposition:   2009-03-12
    Release:   2009-05-26
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors
    View a histogram of Resolution Resolution[Å]: 3.50
    R-Value: 0.223 (obs.)
    R-Free: 0.257
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 98.69 α = 90.00 
    b = 217.18 β = 90.00 
    c = 275.32 γ = 90.00