RCSB Protein Data Bank - RCSB PDB - 3GBM Structure Summary

This browser is either not Javascript enabled or has it turned off.
This site will not function correctly without Javascript.

Crystal Structure of Fab CR6261 in Complex with a H5N1 influenza virus hemagglutinin.

DOI:10.2210/pdb3gbm/pdb

3GBM

Display Files

FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)

Download Files

FASTA Sequence
PDB File (Text)
PDB File (gz)
mmCIF File
mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)

Share this Page

Facebook Twitter LinkedIn Email

Link this Page

Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

Hide

Classification:	Viral Protein / Immune System
Structure Weight:	213736.00

Molecule:

Hemagglutinin

Polymer:

Type:

protein

Length:

334

Chains:

A, C

Fragment:

Receptor Binding Domain, HA1

Organism

Influenza A virus (A/Viet Nam/1203/2004(H5N1))

Gene Name

UniProtKB:

| | Q6DQ33

Molecule:

Hemagglutinin

Polymer:

Type:

protein

Length:

177

Chains:

B, D

Fragment:

Membrane Fusion Domain, HA2

Organism

Influenza A virus (A/Viet Nam/1203/2004(H5N1))

Gene Name

UniProtKB:

| | Q6DQ33

Molecule:

antibody (Fab)

Polymer:

Type:

protein

Length:

226

Chains:

H, I

Fragment:

Fab Heavy Chain

Organism

Homo sapiens

Molecule:

antibody (Fab)

Polymer:

Type:

protein

Length:

221

Chains:

L, M

Fragment:

Fab Lambda Light Chain

Organism

Homo sapiens

Source

Hide

Polymer: 1

Scientific Name:

Influenza a virus (a/viet nam/1203/2004(h5n1))

Taxonomy

Common Name:

A/viet nam/1203/2004(h5n1)

Expression System:

Trichoplusia ni

Polymer: 2

Scientific Name:

Influenza a virus (a/viet nam/1203/2004(h5n1))

Taxonomy

Common Name:

A/viet nam/1203/2004(h5n1)

Expression System:

Trichoplusia ni

Polymer: 3

Scientific Name:

Homo sapiens

Taxonomy

Polymer: 4

Scientific Name:

Homo sapiens

Taxonomy

Polymer: 6

Scientific Name:

Synthetic construct

Taxonomy

Ligand Chemical Component

Hide

Identifier	Formula	Name	Interactions
BMA Search Download	C₆ H₁₂ O₆	BETA-D-MANNOSE		Ligand Explorer
EDO Search Download	C₂ H₆ O₂	1,2-ETHANEDIOL		Ligand Explorer
GOL Search Download	C₃ H₈ O₃	GLYCEROL		Ligand Explorer
NAG Search Download	C₈ H₁₅ N O₆	N-ACETYL-D-GLUCOSAMINE		Ligand Explorer

External Domain Annotations Hide
CATH Classification v3.4.0: 12 Domains - data from CATH

Pfam Classification: 12 Domains - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

Reset Layout

Biological Assembly 1

View in 3D

More Images...

Biological assembly 1 generated by PISA (software)

Downloadable viewers:

MyPDB Personal Annotations Hide

Deposition Summary

Hide

Authors: Ekiert, D.C., Elsliger, M.A., Wilson, I.A.

Deposition:	2009-02-20
Release:	2009-03-10
Last Modified (REVDAT):	2011-07-13

Revision History Hide

Mouse over text for details

2011-07-13
Flag residual B-value

2011-07-13
Version format compliance

Experimental Details

Hide

Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 202.76	α = 90.00
	b = 202.76	β = 90.00
	c = 202.76	γ = 90.00

Molecule of the Month Hide
Epidermal Growth Factor

Nanobodies

Antibodies

Hemagglutinin