3GAN

Crystal structure of gene product from Arabidopsis thaliana At3g22680 with bound suramin

Structural Biology Knowledgebase: 3GAN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 3GAN

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 20867.77

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein At3g22680 A 157 Arabidopsis thaliana Gene Name(s): RDM1 Gene View At3g22680 MWI23.5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SVR
Query on SVR

A 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4- METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5- NAPHTHALENETRISULFONIC ACID
SURAMIN (Synonym)
C51 H40 N6 O23 S6
FIAFUQMPZJWCLV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.190
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 58.38 α = 90.00
b = 58.38 β = 90.00
c = 90.29 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-17
  • Released Date: 2009-03-03
  • Deposition author(s): Burgie, E.S., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4