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GR DNA-binding domain:Sgk 16bp complex-9
DOI:10.2210/pdb3g9o/pdb   NDB ID: PD1244
3G9O
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 29981.58
    Molecule: Glucocorticoid receptor
    Polymer: 1 Type: protein Length: 90
    Chains: A, B
    Fragment: UNP residues 440-525
    Organism Rattus norvegicus
    Gene Names Nr3c1 Grl
    UniProtKB:   Protein Feature View | Search PDB | P06536  
    Molecule: DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3')
    Polymer: 2 Type: dna Length: 16
    Chains: C
    Details: Glucocorticoid receptor binding site: Sgk 16bp top strand
    Molecule: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3')
    Polymer: 3 Type: dna Length: 16
    Chains: D
    Details: Glucocorticoid receptor binding site: Sgk 16bp bottom strand
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Brown rat,rat,rats Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3FYL  Same protein, different DNA 
    3G6P  Same complex, different crystal condition 
    3G6Q  Same DNA binding site, insertion mutation GR gamma 
    3G6R   
    3G6T   
    3G6U   
    3G8U   
    3G8X   
    3G97   
    3G99   
    3G9I   
    3G9J   
    3G9M   
    3G9P   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    ZN
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    ZINC ION
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD1244
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Pufall, M.A.,  Yamamoto, K.R.,  Meijsing, S.H.

    Deposition:   2009-02-13
    Release:   2009-04-21
    Last Modified (REVDAT):   2009-06-02
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.65
    R-Value: 0.178 (obs.)
    R-Free: 0.203
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 117.38 α = 90.00 
    b = 38.47 β = 123.44 
    c = 97.04 γ = 90.00