1.2 Angstrom structure of the exonuclease III homologue Mth0212 DOI:10.2210/pdb3g91/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 31884.62 Molecule: Exodeoxyribonuclease Polymer: 1 Type: protein Length: 265 Chains: A EC#: 3.1.11.2    Mutation: T2A, K116A Organism Methanothermobacter thermautotrophicus str. Delta H Gene Name MTH_212 UniProtKB:   Protein Feature View | Search PDB | O26314         Source Hide Polymer: 1 Scientific Name: Methanothermobacter thermautotrophicus   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 3FZI  1.9 Angstrom structure of the thermophilic exonuclease III homologue Mth0212  3G00  Mth0212 in complex with a 9bp blunt end dsDNA at 1.7 Angstrom  3G0A  Mth0212 with two bound manganese ions  3G0R  Complex of Mth0212 and an 8bp dsDNA with distorted ends  3G1K  Mth0212 (WT) crystallized in a monoclinic space group  3G2C  Mth0212 in complex with a short ssDNA (CGTA)  3G2D  Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang  3G38  The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA  3G3C  Mth0212 (WT) in complex with a 6bp dsDNA containing a single one nucleotide long 3'-overhang  3G3Y  Mth0212 in complex with ssDNA in space group P32  3G4T  Mth0212 (WT) in complex with a 7bp dsDNA  3G8V  The rationally designed catalytically inactive mutant Mth0212(D151N)  3GA6  Mth0212 in complex with two DNA helices      Ligand Chemical Component Hide Identifier Formula Name Interactions GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer PEG Search  Download  C4 H10 O3 DI(HYDROXYETHYL)ETHER   Ligand Explorer PG4 Search  Download  C8 H18 O5 TETRAETHYLENE GLYCOL   Ligand Explorer PO4 Search  Download  O4 P PHOSPHATE ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam   GO Terms: 2 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Lakomek, K.,  Dickmanns, A.,  Ficner, R. Deposition:   2009-02-12 Release:   2010-03-09 Last Modified (REVDAT):   2010-06-23     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.23 R-Value: 0.122 (obs.) R-Free: 0.172 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 44.33 α = 90.00  b = 72.11 β = 117.96  c = 46.33 γ = 90.00