3G5T

Crystal structure of trans-aconitate 3-methyltransferase from yeast


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.12 Å
  • R-Value Free: 0.137
  • R-Value Work: 0.120

Literature

Macromolecules
Sequence Display for 3G5T

Classification: TRANSFERASE

Total Structure Weight: 36201.76

Macromolecule Entities
Molecule Chains Length Organism Details
Trans-aconitate 3-methyltransferase A 299 Saccharomyces cerevisiae EC#: 2.1.1.145 IUBMB
Gene Name(s): TMT1 TAM1 YER175C SYGP-ORF63
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
T8N
Query on T8N

A (2E)-2-(2-methoxy-2-oxoethyl)but-2-enedioic acid
C7 H8 O6
MRNZYUAGJLJQAM-DUXPYHPUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.12 Å
  • R-Value Free: 0.137
  • R-Value Work: 0.120
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.83 α = 90.00
b = 91.89 β = 90.00
c = 104.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-05
  • Released Date: 2009-03-03
  • Deposition author(s): Burgie, E.S., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2011-07-13
    Type: Version format compliance