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X-ray structure of QdtB from T. thermosaccharolyticum in complex with a PLP:TDP-3-aminoquinovose aldimine
 
 
DOI:10.2210/pdb3frk/pdb
3FRK
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Transferase
    Structure Weight: 86917.35
     
    Molecule:QdtB
    Polymer:1Type:polypeptide(L)Length:373
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Thermoanaerobacterium thermosaccharolyticum Go to NCBI Taxonomy entry Common Name: Thermoanaerobacterium thermosaccharolyticum Expression System: Escherichia coli  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    TQP     (2R,3R,4S,5S,6R)-3,5-dihydroxy-4-{[(1E)-{3- hydroxy-2-methyl-5-[
    (phosphonooxy)methyl]pyridin- 4-yl}methylidene]amino}-6-methyltetrahydro- 2H-pyran-2-yl [
    (2R,3S,5R)-3-hydroxy-5-(5- methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)
    - yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate     		C24 H35 N4 O19 P3 3DLigand Explorer Link out to Ligand Expos:TQP Link out to SuperLigands:TQP Link out to SuperHapten:TQP
     
     
  •  
    Move Section Derived Data Hide
     
     
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Biological assembly assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Thoden, J.B.,   Holden, H.M.

    Deposition:   2009-01-08
    Release:   2009-02-17
    Last Modified (REVDAT):   2009-03-03
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.15
    R-Value: 0.215 (obs.)
    R-Free: 0.269
    Space Group: P 61
    Unit Cell:
      Length [Å] Angles [°]
    a = 109.10 α = 90.00 
    b = 109.10 β = 90.00 
    c = 177.90 γ = 120.00