The Crystal Structure of [Fe]-Hydrogenase (Hmd) Holoenzyme from Methanocaldococcus jannaschii DOI:10.2210/pdb3f47/pdb

3F47   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Oxidoreductase Structure Weight: 39400.65 Molecule: 5,10-methenyltetrahydromethanopterin hydrogenase Polymer: 1 Type: protein Length: 358 Chains: A EC#: 1.12.98.2    Organism Methanocaldococcus jannaschii Gene Names hmd MJ0784 UniProtKB:   Protein Feature View | Search PDB | Q58194         Source Hide Polymer: 1 Scientific Name: Methanocaldococcus jannaschii   Taxonomy   Common Name: Methanococcus jannaschii Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 2B0J  The Hmd apoenzyme.  3DAF  The Hmd holoenzyme, inhibited by cyanide.  3DAG  The Hmd holoenzyme, reconstituted with iron guanylyl pyridinol cofactor.  3F46        Ligand Chemical Component Hide Identifier Formula Name Interactions CMO Search  Download  C O CARBON MONOXIDE   Ligand Explorer FE2 Search  Download  Fe FE (II) ION   Ligand Explorer I2C Search  Download  C19 H23 N6 O10 P 5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl- 6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam   GO Terms: 8 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Hiromoto, T.,  Pilak, O.,  Warkentin, E.,  Thauer, R.K.,  Shima, S.,  Ermler, U. Deposition:   2008-10-31 Release:   2009-02-10 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Flag residual B-value     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.75 R-Value: 0.174 (obs.) R-Free: 0.205 Space Group: I 41 2 2 Unit Cell:   Length [Å] Angles [°] a = 95.93 α = 90.00  b = 95.93 β = 90.00  c = 165.81 γ = 90.00      Molecule of the Month Hide Hydrogenase