3F10

Crystal structure of Clostridium Acetobutylicum 8-oxoguanine DNA glycosylase in complex with 8-oxoguanosine

Structural Biology Knowledgebase: 3F10 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3F10

Classification: HYDROLASE LYASE

Total Structure Weight: 34873.13

Macromolecule Entities
Molecule Chains Length Organism Details
8-oxoguanine-DNA-glycosylase A 292 Clostridium acetobutylicum EC#: 3.2.2 IUBMB 4.2.99.18 IUBMB
Mutation: K222Q
Gene Name(s): CA_C2707
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8HG
Query on 8HG

A 2'-DEOXY-8-OXOGUANOSINE
C10 H13 N5 O5
HCAJQHYUCKICQH-VPENINKCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.215
  • Space Group: P 41 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 138.50 α = 90.00
b = 138.50 β = 90.00
c = 138.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-27
  • Released Date: 2009-04-07
  • Deposition author(s): Faucher, F., Doublie, S.

Revision History

  • 2012-03-21
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4