A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6048 DOI:10.2210/pdb3es0/pdb   NDB ID: DD0098

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: DNA Structure Weight: 8283.07 Molecule: 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' Polymer: 1 Type: dna Length: 12 Chains: A, B Details: Bimolecular anti-parallel-stranded DNA quadruplex     Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1JPQ  Same quadruplex structure in its native form (ligand-free)  1JRN  Same quadruplex structure in its native form (ligand-free)  1L1H  Same quadruplex structure bound with a different ligand BSU-6039  3CE5  A bimolecular parallel-stranded human telomeric quadruplex in complex with a 3,6,9-trisubstituted acridine molecule BRACO19  3EM2  A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6038  3EQW  A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in small unit cell  3ERU  A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6045  3ET8  A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6054      Ligand Chemical Component Hide Identifier Formula Name Interactions K Search  Download  K POTASSIUM ION   Ligand Explorer NCK Search  Download  C31 H41 N5 O2 3,6-Bis[3-(4-methylpiperidino)propionamido]acridine   Ligand Explorer     Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: DD0098     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Campbell, N.H.,  Parkinson, G.,  Neidle, S. Deposition:   2008-10-03 Release:   2008-10-14 Last Modified (REVDAT):   2009-04-28     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.20 R-Value: 0.197 (obs.) R-Free: 0.245 Space Group: P 21 21 2 Unit Cell:   Length [Å] Angles [°] a = 55.53 α = 90.00  b = 42.46 β = 90.00  c = 27.30 γ = 90.00