3EKF

Crystal structure of the A264Q heme domain of cytochrome P450 BM3

Structural Biology Knowledgebase: 3EKF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3EKF

Classification: OXIDOREDUCTASE

Total Structure Weight: 108626.55

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome P450(BM-3) A, B 470 Bacillus megaterium EC#: 1.14.14.1 IUBMB
Fragment: heme domain
Mutation: A264Q
Gene Name(s): cyp102A1 cyp102
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.215
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.07 α = 90.00
b = 119.71 β = 90.00
c = 146.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-19
  • Released Date: 2008-12-30
  • Deposition author(s): Toogood, H.S., Leys, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4