3EHV

X-ray structure of human ubiquitin Zn(II) adduct


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 3EHV

Classification: LIGASE

Total Structure Weight: 25795.90

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin A, B, C 76 Homo sapiens EC#: 6.3.2.19 IUBMB
Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.222
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 44.36 α = 90.00
b = 50.95 β = 90.00
c = 93.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-15
  • Released Date: 2009-03-17
  • Deposition author(s): Falini, G., Fermani, S., Tosi, G.

Revision History

  • Version 1_0: 2009-03-17

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance