3DVN

Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 3DVN

Classification: IMMUNE SYSTEM

Total Structure Weight: 132197.97

Macromolecule Entities
Molecule Chains Length Organism Details
Human IgG1 fab fragment light chain A, L 217 Homo sapiens Gene Name(s): IGK@
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Human IgG1 fab fragment heavy chain B, H 230 Homo sapiens
Ubiquitin D77 U, X 80 Homo sapiens Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin V, Y 79 Homo sapiens Mutation: K63R
Gene Name(s): UBC Gene View


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.220
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 177.71 α = 90.00
b = 94.57 β = 107.21
c = 97.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-18
  • Released Date: 2008-09-30
  • Deposition author(s): Hymowitz, S.G.

Revision History

  • Version 1_0: 2008-09-30

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Version format compliance