Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor DOI:10.2210/pdb3dpe/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 18862.40 Molecule: Neutrophil collagenase Polymer: 1 Type: protein Length: 163 Chains: A EC#: 3.4.24.34    Fragment: MMP-8 catalytic domain, UNP residues 100-262 Organism Homo sapiens Gene Names MMP8 CLG1 UniProtKB:   Protein Feature View | Search PDB | P22894         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1UTT, 1UTZ  Crystal complexes of MMP-12 with non-zinc chelating inhibitors  1XUC, 1XUD, 1XUR  Crystal complexes of MMP-13 with non-zinc chelating inhibitors  2OW9, 2OZR  Crystal complexes of MMP-13 with non-zinc chelating inhibitors  3DNG  Crystal complex of MMP-8 with a related non-zinc chelating inhibitor  3DPF  Crystal complex of MMP-8 with the same inhibitor (orthorombic form)      Ligand Chemical Component Hide Identifier Formula Name Interactions AXB Search  Download  C24 H21 N5 O6 S2 N-{[2-(2-amino-3,4-dioxocyclobut-1-en-1-yl)- 1,2,3,4-tetrahydroisoquinolin-7-yl]methyl}- 4-oxo-3,5,6,8-tetrahydro-4H-thiopyrano[4',3':4,5]thieno[2,3- d]pyrimidine-2-carboxamide 7,7-dioxide   Ligand Explorer CA Search  Download  Ca CALCIUM ION   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) AXB Search  Download  IC50: 57 nM (100) - data from BindingDB   IC50: 57 nM - data from BindingMOAD   IC50: 57 nM - data from PDBbind       External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Pochetti, G.,  Montanari, R.,  Mazza, F. Deposition:   2008-07-08 Release:   2009-03-03     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.60 R-Value: 0.210 (work) R-Free: 0.242 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 32.29 α = 90.00  b = 68.95 β = 105.41  c = 32.75 γ = 90.00