3DFV

Adjacent GATA DNA binding

Structural Biology Knowledgebase: 3DFV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.276

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3DFV

Classification: Transcription / DNA

Total Structure Weight: 26484.05


Macromolecule Entities
Molecule Chains Length Organism Details
Trans-acting T-cell-specific transcription factor GATA-3 C, D 63 Mus musculus Fragment: UNP residues 308-370
Gene Name(s): Gata3 Gata-3
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*DTP*DTP*DCP*DTP*DGP*DAP*DTP*DAP*DAP*DGP*DAP*DCP*DTP*DTP*DAP*DTP*DCP*DTP*DGP*DC)-3') Y 20 synthetic
DNA (5'-D(*DAP*DAP*DGP*DCP*DAP*DGP*DAP*DTP*DAP*DAP*DGP*DTP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DG)-3') Z 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.276
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 137.98 α = 90.00
b = 35.76 β = 113.25
c = 54.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-12
  • Released Date: 2008-07-29
  • Deposition author(s): Bates, D.L., Kim, G.K., Guo, L., Chen, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4