3DBZ

human surfactant protein D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 3DBZ

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 52413.68

Macromolecule Entities
Molecule Chains Length Organism Details
Pulmonary surfactant-associated protein D A, B, C 160 Homo sapiens Fragment: Head and Neck Domain, UNP residues 223-375
Gene Name(s): SFTPD Gene View COLEC7 PSPD SFTP4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.180
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 55.26 α = 90.00
b = 107.60 β = 91.80
c = 55.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-02
  • Released Date: 2008-08-05
  • Deposition author(s): Head, J.F.

Revision History

  • Version 1_0: 2008-08-05

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description