3CQP

Human SOD1 G85R Variant, Structure I

Structural Biology Knowledgebase: 3CQP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3CQP

Classification: OXIDOREDUCTASE

Total Structure Weight: 64365.73

Macromolecule Entities
Molecule Chains Length Organism Details
Superoxide dismutase [Cu-Zn] A, B, C, D 153 Homo sapiens EC#: 1.15.1.1 IUBMB
Mutation: G85R
Gene Name(s): SOD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLI
Query on MLI

A MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, B, C, D COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.183
  • Space Group: I 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.47 α = 90.00
b = 116.81 β = 90.00
c = 147.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-03
  • Released Date: 2008-04-29
  • Deposition author(s): Cao, X., Antonyuk, S., Seetharaman, S.V., Whitson, L.J., Taylor, A.B., Holloway, S.P., Strange, R.W., Doucette, P.A., Valentine, J.S., Tiwari, A., Hayward, L.J., Padua, S., Cohlberg, J.A., Hasnain, S.S., Hart, P.J.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4