Structure of Rattus norvegicus NTPDase2 in complex with AMP
3CJ7
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 50959.72
    Molecule: Ectonucleoside triphosphate diphosphohydrolase 2
    Polymer: 1 Type: protein Length: 456
    Chains: A
    Fragment: Ectodomain, Extracellular domain, UNP residues 29-461
    Organism: Rattus norvegicus
    Gene Names: Entpd2 Cd39l1
    UniProtKB: Protein Feature View | Search PDB | O35795  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Norway rat Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3CJ1   apo form 
    3CJ9   Ca2+, AMP, and PO4 complex 
    3CJA   Ca2+ and AMPPNP complex 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AMP
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    AMP C10 H14 N5 O7 P
    ADENOSINE MONOPHOSPHATE
    AMP:3CJ7
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Zebisch, M.,  Strater, N.

    Deposition:   2008-03-12
    Release:   2008-04-29
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.80
    R-Value: 0.170 (obs.)
    R-Free: 0.206
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 41.07 α = 90.00 
    b = 68.90 β = 90.00 
    c = 163.83 γ = 90.00