3CFQ

Crystal structure of human wild-type transthyretin in complex with diclofenac


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 3CFQ

Classification: TRANSPORT PROTEIN

Total Structure Weight: 26515.32

Macromolecule Entities
Molecule Chains Length Organism Details
Transthyretin A, B 118 Homo sapiens Fragment: UNP residues 30-147
Gene Name(s): TTR Gene View PALB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIF
Query on DIF

A, B 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID
DICLOFENAC (Synonym)
C14 H11 Cl2 N O2
DCOPUUMXTXDBNB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DIF IC50: 140000 nM (100) BindingDB
Kd: 1000 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.209
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 43.07 α = 90.00
b = 85.49 β = 90.00
c = 63.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-04
  • Released Date: 2009-03-03
  • Deposition author(s): Lima, L.-M.T.R., Foguel, D., Polikarpov, I.

Revision History

  • 2011-07-13
    Type: Version format compliance