POP-OUT | CLOSE
Crystal structure of Sambucus nigra agglutinin II (SNA-II)-tetragonal crystal form- complexed to alpha1 methylgalactose
3CA5
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Sugar Binding Protein , Plant Protein
    Structure Weight: 31153.61
    Molecule: Agglutinin II
    Polymer: 1 Type: protein Length: 258
    Chains: A
    Organism Sambucus nigra
    UniProtKB:   Protein Feature View | Search PDB | P33183  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sambucus nigra   Taxonomy   Common Name: European elder, elderberry  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3C9Z  Sambucus nigra agglutinin II - tetragonal crystal form 
    3CA0  Sambucus nigra agglutinin II - hexagonal crystal form 
    3CA1  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to galactose 
    3CA3  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to N-acetygalactosamine 
    3CA4  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to lactose 
    3CA6  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to Tn antigen 
    3CAH  Sambucus nigra agglutinin II - tetragonal crystal form - fucose 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    ACT
    Search 
    Download      		ACT C2 H3 O2
    ACETATE ION
    AMG
    Search 
    Download      		AMG C7 H14 O6
    ALPHA-METHYL-D-GALACTOSIDE
    		AMG:3CA5
    FUC
    Search 
    Download      		FUC C6 H12 O5
    ALPHA-L-FUCOSE
    NAG
    Search 
    Download      		NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    SO4
    Search 
    Download      		SO4 O4 S
    SULFATE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
Reset Layout
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Maveyraud, L.,  Mourey, L.

    Deposition:   2008-02-19
    Release:   2008-11-25
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
    2011-07-13
    Biological assembly
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.55
    R-Value: 0.135 (obs.)
    R-Free: 0.180
    Space Group: I 41 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 126.12 α = 90.00 
    b = 126.12 β = 90.00 
    c = 76.04 γ = 90.00