Sambucus nigra agglutinin II (SNA-II), hexagonal crystal form DOI:10.2210/pdb3ca0/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Sugar Binding Protein , Plant Protein Structure Weight: 31722.04 Molecule: Agglutinin II Polymer: 1 Type: protein Length: 258 Chains: A Organism Sambucus nigra UniProtKB:   Protein Feature View | Search PDB | P33183         Source Hide Polymer: 1 Scientific Name: Sambucus nigra   Taxonomy   Common Name: European elder, elderberry   Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Synthetic construct   Taxonomy     Polymer: 5 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3C9Z  Sambucus nigra agglutinin II - tetragonal crystal form  3CA1  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to galactose  3CA3  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to N-acetygalactosamine  3CA4  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to lactose  3CA5  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to methyl-galactose  3CA6  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to Tn antigen  3CAH  Sambucus nigra agglutinin II - tetragonal crystal form - complexed to fucose      Ligand Chemical Component Hide Identifier Formula Name Interactions ACT Search  Download  C2 H3 O2 ACETATE ION   Ligand Explorer BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer XYP Search  Download  C5 H10 O5 BETA-D-XYLOPYRANOSE   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Maveyraud, L.,  Niwa, H.,  Guillet, V.,  Palmer, R.A.,  Reynolds, C.D.,  Mourey, L. Deposition:   2008-02-19 Release:   2008-11-25 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Flag residual B-value 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.95 R-Value: 0.173 (obs.) R-Free: 0.194 Space Group: P 64 2 2 Unit Cell:   Length [Å] Angles [°] a = 120.20 α = 90.00  b = 120.20 β = 90.00  c = 177.34 γ = 120.00      Molecule of the Month Hide Ricin Cholera Toxin