Golgi alpha-mannosidase II with an empty active site DOI:10.2210/pdb3bub/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 120343.12 Molecule: Alpha-mannosidase 2 Polymer: 1 Type: protein Length: 1045 Chains: A EC#: 3.2.1.114    Fragment: Catalytic domain; UNP residues 76-1108 Organism Drosophila melanogaster Gene Names alpha-Man-II GmII CG18802 UniProtKB:   Protein Feature View | Search PDB | Q24451         Source Hide Polymer: 1 Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Drosophila melanogaster       Related PDB Entries Hide Identifier Details 1HTY  dGMII + Tris  1HWW  dGMII + Swainsonine  1HXK  dGMII + Deoxymannojirimicin  1PS2  dGMII + Kifunensine  1QWN  dGMII + 5fluoro-Gulosylfluoride  1QX1  dGMII_D341N + 2F-mannosylF  1R33  dGMII + 5-thio-D-mannopyranosylamine  1R34  dGMII + 5-thio-D-mannopyranosylamidinium salt  1TQS  dGMII + Salacinol  1TQT  dGMII + Diastereomer of Salacinol  1TQU  dGMII + Ghavamiol  1TQV  dGMII + Blintol  1TQW  dGMII + Blintol Diastereomer  2ALW  dGMII + Noeuromycin  2F18  dGMII + (2R,3R,4S)-2-({[(1R)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidine-3,4-diol  2F1A  dGMII + (2R,3R,4S)-2-({[(1S)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidine-3,4-diol  2F1B  dGMII + (2R,3R,4S,5R)-2-({[(1R)-2-hydroxy-1-phenylethyl]amino}methyl)-5-methylpyrrolidine-3,4-diol  2F7O  dGMII + Mannostatin A  2F7P  dGMII + Benzyl-mannostatin A  2F7Q  dGMII + Aminocyclopentitetrol  2F7R  dGMII + Benzyl-aminocyclopentitetrol  3BUD  dGMII_D204A + MPD, NAG, Zn, PO4  3BUI  dGMII_D204A + MPD, TRIS, Zn      Ligand Chemical Component Hide Identifier Formula Name Interactions MPD Search  Download  C6 H14 O2 (4S)-2-METHYL-2,4-PENTANEDIOL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 5 Domains - data from CATH   Pfam Classification: 3 Domains - data from Pfam   GO Terms: 15 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Kuntz, D.A.,  Rose, D.R. Deposition:   2008-01-02 Release:   2008-07-01 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.38 R-Value: 0.180 (obs.) R-Free: 0.204 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 68.76 α = 90.00  b = 109.62 β = 90.00  c = 138.65 γ = 90.00