3BRG

CSL (RBP-Jk) bound to DNA

Structural Biology Knowledgebase: 3BRG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BRG

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 58203.50


Macromolecule Entities
Molecule Chains Length Organism Details
Recombining binding protein suppressor of hairless C 427 Mus musculus Fragment: core domain
Gene Name(s): Rbpj Igkjrb1 Igkrsbp Rbpsuh
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') A 15 synthetic
DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') B 15 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.219
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.77 α = 90.00
b = 95.39 β = 90.00
c = 113.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-21
  • Released Date: 2008-04-01
  • Deposition author(s): Friedmann, D.R., Kovall, R.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4