3BH7

Crystal structure of the RP2-Arl3 complex bound to GDP-AlF4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 3BH7

Classification: SIGNALING PROTEIN

Total Structure Weight: 58782.38

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribosylation factor-like protein 3 A 164 Mus musculus Fragment: residues 14-177
Gene Name(s): Arl3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein XRP2 B 352 Homo sapiens Gene Name(s): RP2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ALF
Query on ALF

A TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.232
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 73.70 α = 90.00
b = 77.94 β = 90.00
c = 97.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-28
  • Released Date: 2008-03-25
  • Deposition author(s): Veltel, S., Gasper, R., Wittinghofer, A.

Revision History

  • Version 1_0: 2008-03-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2014-03-05

    Type: Database references