3BDL

Crystal structure of a truncated human Tudor-SN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 3BDL

Classification: HYDROLASE

Total Structure Weight: 64781.14

Macromolecule Entities
Molecule Chains Length Organism Details
Staphylococcal nuclease domain-containing protein 1 A 570 Homo sapiens EC#: 3.1.31.1 IUBMB
Fragment: TSN-64 (SN3, SN4, Tudor, SN5 domains)
Gene Name(s): SND1 Gene View TDRD11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.175
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 97.40 α = 90.00
b = 91.93 β = 91.26
c = 88.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-15
  • Released Date: 2008-08-26
  • Deposition author(s): Li, C.L.

Revision History

  • Version 1_0: 2008-08-26

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance