3B9W

The 1.3 A resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins

Structural Biology Knowledgebase: 3B9W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.147

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3B9W

Classification: TRANSPORT PROTEIN

Total Structure Weight: 43167.57

Macromolecule Entities
Molecule Chains Length Organism Details
Ammonium transporter family A 407 Nitrosomonas europaea Fragment: residues 25-425
Gene Name(s): Rh50 NE0448

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Channels: Amt/Mep/Rh proteins

Protein Name: Rh protein, possible ammonia or CO2 channel


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.147
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 100.06 α = 90.00
b = 100.06 β = 90.00
c = 143.83 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-07
  • Released Date: 2007-11-20
  • Deposition author(s): Lupo, D., Winkler, F.K.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4