3B7O

Crystal structure of the human tyrosine phosphatase SHP2 (PTPN11) with an accessible active site

Structural Biology Knowledgebase: 3B7O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3B7O

Classification: HYDROLASE

Total Structure Weight: 37013.15

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein phosphatase non-receptor type 11 A 316 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: 'Residues 237-529 (Isoform 2)'
Gene Name(s): PTPN11 Gene View PTP2C SHPTP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLT
Query on MLT

A D-MALATE
(2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY- SUCCINIC ACID (Synonym)
C4 H6 O5
BJEPYKJPYRNKOW-UWTATZPHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.170
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.81 α = 90.00
b = 86.50 β = 90.00
c = 166.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-31
  • Released Date: 2007-11-13
  • Deposition author(s): Ugochukwu, E., Barr, A., Patel, A., King, O., Niesen, F., Salah, E., Savitsky, P., Pilka, E.S., Elkins, J., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., von Delft, F., Knapp, S., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor