3ASI

Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6

Structural Biology Knowledgebase: 3ASI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ASI

Classification: CELL ADHESION

Total Structure Weight: 45100.09

Macromolecule Entities
Molecule Chains Length Organism Details
Neurexin-1-alpha A 410 Bos taurus Fragment: UNP residues 923-1323
Mutation: I1068F
Gene Name(s): NRXN1 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.197
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.91 α = 90.00
b = 79.38 β = 90.00
c = 78.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-13
  • Released Date: 2011-04-13
  • Deposition author(s): Tanaka, H., Nogi, T., Yasui, N., Takagi, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4