Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase DOI:10.2210/pdb3ao2/pdb

3AO2   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/transferase Inhibitor Structure Weight: 37370.41 Molecule: POL polyprotein Polymer: 1 Type: protein Length: 163 Chains: A, B Fragment: Integrase CATALYTIC CORE DOMAIN, UNP residues 765-927 Mutation: C56S, S123G, T124A, K127R, W131D, F139D, F185H Organism Human immunodeficiency virus 1 Gene Name gag-pol UniProtKB:   Protein Feature View | Search PDB | P04585         Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1bl3    3AO1    3AO3    3AO4    3AO5    3l3u    3OVN        Ligand Chemical Component Hide Identifier Formula Name Interactions AVX Search  Download  C11 H10 Br N3 O2 3-(7-bromo-1,3-benzodioxol-5-yl)-1-methyl- 1H-pyrazol-5-amine   Ligand Explorer CD Search  Download  Cd CADMIUM ION   Ligand Explorer CL Search  Download  Cl CHLORIDE ION   Ligand Explorer DTT Search  Download  C4 H10 O2 S2 2,3-DIHYDROXY-1,4-DITHIOBUTANE   Ligand Explorer DTV Search  Download  C4 H10 O2 S2 (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) AVX Search  Download  N/A in BindingDB Kd: 170000 nM - data from BindingMOAD   Kd: 170000 nM - data from PDBbind       External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Wielens, J.,  Chalmers, D.K.,  Headey, S.J.,  Parker, M.W.,  Scanlon, M.J. Deposition:   2010-09-20 Release:   2011-03-16     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.80 R-Value: 0.189 (obs.) R-Free: 0.217 Space Group: P 32 Unit Cell:   Length [Å] Angles [°] a = 49.16 α = 90.00  b = 49.16 β = 90.00  c = 103.12 γ = 120.00